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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19854962_19855065_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19854962 - 19855065
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TTGCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCCCCGCTCACT
Flanking Amino Acid:
KLRLQHSIEREKLIVSCEQE
Intron Amino Acid Position:
2575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.5
45.8
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
77.4
0.62
0.8
69.6
36.7
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
38.9
-0.7
2.5
54.45
46.8

Associated Gene:

Gene:
ANKRD11
Ensembl Gene ID:
ENSAPLG00000019829
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031423
19851918 - 19946771
94854