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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19855165_19855992_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19855165 - 19855992
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CCAGCTCTAACC
Flanking Amino Acid:
KPLSKLHIPVIAPPPSLAEP
Intron Amino Acid Position:
2542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
64.9
41.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72.4
0.5
0.9
65.8
36
Minor 5ss
29.3
-2.4
2.8
32.5
36
Minor BPS
48.4
-0.1
1.8
55.12
43.4

Associated Gene:

Gene:
ANKRD11
Ensembl Gene ID:
ENSAPLG00000019829
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031423
19851918 - 19946771
94854