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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19863367_19863833_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19863367 - 19863833
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTGT
5'SS Class:
major
3'SS Sequence:
TTTCCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
AACACCTAAAGT
Flanking Amino Acid:
HDAANNGHFKVVKLLLHYGG
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
70.9
41.9
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
85.8
0.81
0.8
77.5
35.7
Minor 5ss
36.9
-1.5
3.1
50.4
45.9
Minor BPS
48.4
-0
2
64.09
45.9

Associated Gene:

Gene:
ANKRD11
Ensembl Gene ID:
ENSAPLG00000019829
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031423
19851918 - 19946771
94854