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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19863977_19865431_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19863977 - 19865431
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTGAT
U12 Branch Point Sequence:
TGATGCCCACCT
Flanking Amino Acid:
GADVNVKDFAGWTALHEACN
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
57.3
0.18
1.3
48.8
46.3
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
41.1
-0.5
2.3
62.85
46.4

Associated Gene:

Gene:
ANKRD11
Ensembl Gene ID:
ENSAPLG00000019829
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031423
19851918 - 19946771
94854