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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19866734_19876369_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19866734 - 19876369
Intron Length:
9636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGAA
5'SS Class:
major
3'SS Sequence:
CGTTGCATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CGTTGCATCACA
Flanking Amino Acid:
TNGDQKDSDTEKQGPERKRI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
37.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
69.3
0.43
1
61.4
38.9
Minor 5ss
26.8
-2.7
3.7
37.2
47.4
Minor BPS
45
-0.4
2.4
60.7
45.1

Associated Gene:

Gene:
ANKRD11
Ensembl Gene ID:
ENSAPLG00000019829
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031423
19851918 - 19946771
94854