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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19977027_19978284_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19977027 - 19978284
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCT|GCAGGTAAC
5'SS Class:
major
3'SS Sequence:
TCCCTCTTCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CCTCCTTTATCT
Flanking Amino Acid:
WARPRPQPRGLLLSQTLSPT
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.5
66.9
41.3
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
58
0.18
1.6
67.2
32.7
Minor 5ss
27.2
-2.6
4
45.5
42.9
Minor BPS
59.5
0.38
1.7
72.72
44.5

Associated Gene:

Gene:
SPG7
Ensembl Gene ID:
ENSAPLG00000004074
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004240
19976920 - 20007481
30562