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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19985751_19988334_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19985751 - 19988334
Intron Length:
2584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGATAT
5'SS Class:
major
3'SS Sequence:
TTTGTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CAATTCTGACCT
Flanking Amino Acid:
VSYKHPGFYGNDVISLIVTL
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
73.2
31.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
88
0.85
0.7
85.4
29.3
Minor 5ss
47.4
-0.3
2.9
64.7
41.1
Minor BPS
49.9
0.07
1.8
66.44
43.9

Associated Gene:

Gene:
SPG7
Ensembl Gene ID:
ENSAPLG00000004074
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004240
19976920 - 20007481
30562