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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19988438_19989943_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19988438 - 19989943
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTGCCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
ACATCTTCAGCA
Flanking Amino Acid:
AGRAGGFNAFNQLKMARFTI
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
75
0.56
0.8
69
31.6
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
49.2
-0
1.8
58.86
40.9

Associated Gene:

Gene:
SPG7
Ensembl Gene ID:
ENSAPLG00000004074
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004240
19976920 - 20007481
30562