Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19991050_19996737_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19991050 - 19996737

Intron Length:

5688

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTCAGTATT

5'SS Class:

major

3'SS Sequence:

TGTTTTGCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

GAAACCTTCACG

Flanking Amino Acid:

TLNQLLVEMDGMGTADHVIV

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.3

83.5

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

82.4

0.73

0.9

76.6

37.7

Minor 5ss

37.2

-1.4

2.9

49.2

40.8

Minor BPS

51.1

-0.1

1.9

55.5

44.8

Associated Gene:

Gene:

SPG7

Ensembl Gene ID:

ENSAPLG00000004074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004240

19976920 - 20007481

30562