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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19998210_19999246_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19998210 - 19999246
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGACAT
5'SS Class:
major
3'SS Sequence:
CTCTTGTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTTGTAAACT
Flanking Amino Acid:
HLAELTPGFSGADIANICNE
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
64.6
41.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81.7
0.71
0.8
75.6
33
Minor 5ss
40.2
-1.1
3.2
57.3
46.8
Minor BPS
52.8
0.17
2.3
78.66
44.1

Associated Gene:

Gene:
SPG7
Ensembl Gene ID:
ENSAPLG00000004074
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004240
19976920 - 20007481
30562