Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20005369_20005741_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20005369 - 20005741

Intron Length:

373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGGCTG

5'SS Class:

major

3'SS Sequence:

TACTGTCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

TTCTTGTTACTG

Flanking Amino Acid:

SQGLQQMMDHEAKVLVAQAY

Intron Amino Acid Position:

657

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.3

64.3

47.1

Major BPS

71.4

0.53

1.2

63.4

Major PPT

74.6

0.55

0.9

66.1

40.5

Minor 5ss

35.7

-1.6

3.4

46.8

42.2

Minor BPS

46.9

-0.3

2.3

57.74

Associated Gene:

Gene:

SPG7

Ensembl Gene ID:

ENSAPLG00000004074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004240

19976920 - 20007481

30562