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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20068724_20069170_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20068724 - 20069170
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
CACTCTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
CTAAAGTGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
75.5
40.6
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
78.2
0.63
0.8
69
36.7
Minor 5ss
40.5
-1.1
3.4
58.6
40.3
Minor BPS
44
-0.3
2.3
63.75
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516
ENSAPLT00000020578
20067436 - 20091162
23727