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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20071125_20071542_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20071125 - 20071542
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAAC
5'SS Class:
major
3'SS Sequence:
TTTTACATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTTCTGAATT
Flanking Amino Acid:
VPFEVAPYLKVHIMYPPFVP
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
34.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.3
0.8
0.8
82.5
33.5
Minor 5ss
26.9
-2.6
3
33.2
42.3
Minor BPS
67.1
0.62
1.4
78.77
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020578
20067436 - 20091162
23727
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516