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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20071639_20071734_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20071639 - 20071734
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCACCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCATCTTTATGT
Flanking Amino Acid:
LAKTRLADLKVAIEDMGLYE
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
65
0.34
1
55.5
39.8
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
49.1
0.01
1.9
63.73
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020578
20067436 - 20091162
23727
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516