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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20073562_20074628_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20073562 - 20074628
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTATTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTTATT
Flanking Amino Acid:
VCMAFIDSLKRADKIPSNLY
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.9
45.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.3
27.8
Minor 5ss
37.8
-1.4
3.1
48.8
47
Minor BPS
63.1
0.49
1.6
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516
ENSAPLT00000020578
20067436 - 20091162
23727