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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20074706_20076542_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20074706 - 20076542
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATATGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTTTTTATAT
Flanking Amino Acid:
CCAMKEKMLQDESEVETSHS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.8
0.54
1
66.8
44
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
51.3
0.12
1.7
67.78
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516
ENSAPLT00000020578
20067436 - 20091162
23727