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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20076648_20077228_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20076648 - 20077228
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTGTCCTGACTC
Flanking Amino Acid:
VLIVDQAKHEDVPAQIALIS
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.7
0.65
0.9
72.7
37.5
Minor 5ss
37.8
-1.4
3.1
48.3
47.5
Minor BPS
52.5
0.06
1.8
62.64
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516
ENSAPLT00000020578
20067436 - 20091162
23727