Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20077925_20079414_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20077925 - 20079414

Intron Length:

1490

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATGG

5'SS Class:

strong_major

3'SS Sequence:

TACCTTTCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TGGTTTTTACCT

Flanking Amino Acid:

IAASYFNPPDRQGPCLSLFV

Intron Amino Acid Position:

336

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

72.5

39.9

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

81.8

0.72

0.8

76.1

32.2

Minor 5ss

37.3

-1.4

47.6

47.9

Minor BPS

61.5

0.44

1.6

75.57

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006484

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038929

20068647 - 20091162

22516

ENSAPLT00000020578

20067436 - 20091162

23727

ENSAPLT00000017389

20068647 - 20091162

22516

ENSAPLT00000006758

20068647 - 20091699

23053