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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20085508_20085729_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20085508 - 20085729
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATCTGTT
5'SS Class:
weak_major
3'SS Sequence:
GCTTTCTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CCACCACTAATG
Flanking Amino Acid:
KCPIVLLSAVLWWPRLEPVL
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
70.6
39.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
73.5
0.53
0.8
66
35.9
Minor 5ss
51.5
0.05
2.9
72.3
40
Minor BPS
43.2
-0.6
1.9
43.6
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020578
20067436 - 20091162
23727
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516