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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20086839_20088558_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20086839 - 20088558
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
ACACAGCTAACA
Flanking Amino Acid:
LKRLGTDTEQLLVSLLFFSL
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.9
74.7
41.3
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
25.3
-2.8
4
38.3
46.6
Minor BPS
40.3
-0.7
2.3
50.15
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038929
20068647 - 20091162
22516
ENSAPLT00000020578
20067436 - 20091162
23727
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053