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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20089815_20090227_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20089815 - 20090227
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAT
U12 Branch Point Sequence:
TGGTTGTTACAG
Flanking Amino Acid:
WPLLFQSAEKGSRKYFVLHS
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
58.9
0.22
1.2
54.7
43.1
Major PPT
74.7
0.56
1
67.9
42.5
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
42.3
-0.7
2.3
48.4
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006484
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020578
20067436 - 20091162
23727
ENSAPLT00000017389
20068647 - 20091162
22516
ENSAPLT00000006758
20068647 - 20091699
23053
ENSAPLT00000038929
20068647 - 20091162
22516