Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20090824_20091060_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20090824 - 20091060

Intron Length:

237

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTGAA

5'SS Class:

major

3'SS Sequence:

GTCTGTTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAC

U12 Branch Point Sequence:

TGTGCCTCACCT

Flanking Amino Acid:

VGQGQDPVEHGDPVEVISKA

Intron Amino Acid Position:

983

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.6

1.2

73.7

32.5

Major BPS

54.7

0.12

1.2

59.2

39.1

Major PPT

75.6

0.58

0.9

72.8

37.5

Minor 5ss

27.9

-2.5

30.1

36.3

Minor BPS

55.3

0.24

76.98

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006484

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006758

20068647 - 20091699

23053