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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20092567_20092980_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20092567 - 20092980
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
CCTTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
GGGTGCTGAGCC
Flanking Amino Acid:
QMRHSGAKPLQCEICGFQCR
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
44.5
-0.4
2.1
53.03
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006256
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006496
20092281 - 20098353
6073