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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20093464_20093934_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20093464 - 20093934
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAG
U12 Branch Point Sequence:
GCAGTTAGAACC
Flanking Amino Acid:
AVYRGADGMKKHIKEHHEEV
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
63.3
0.33
1.6
73.3
39.1
Major PPT
80.2
0.68
0.7
72.2
32.4
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
42
-0.6
1.6
45.01
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006256
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006496
20092281 - 20098353
6073