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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20094201_20094623_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20094201 - 20094623
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTGGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAT
U12 Branch Point Sequence:
TGAGTGTGAAAC
Flanking Amino Acid:
DDSFEPYPEKKVSSKKSDSK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
67.8
37.5
Major BPS
57.5
0.19
1
52.7
34.2
Major PPT
63.6
0.31
1.7
73.2
31.7
Minor 5ss
31.3
-2.1
3.6
41
39.9
Minor BPS
41.1
-0.7
2.1
49.74
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006256
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006496
20092281 - 20098353
6073