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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20094705_20095808_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20094705 - 20095808
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGAA
5'SS Class:
major
3'SS Sequence:
CTCTCTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAA
U12 Branch Point Sequence:
GTGTCGGTAAAG
Flanking Amino Acid:
VKDEFSDLSEGDFLSDDENE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.4
33.5
Major BPS
49.1
-0
1.3
51
41.5
Major PPT
81.9
0.72
0.7
80
25.3
Minor 5ss
23.9
-3
3
20.8
37.5
Minor BPS
42.5
-0.7
2.6
53.08
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006256
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006496
20092281 - 20098353
6073