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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20095888_20096122_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20095888 - 20096122
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
CTTCATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTCTCCTTCATT
Flanking Amino Acid:
ETERCSWQLQGQLSGKQVLS
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.5
39.1
Major BPS
75
0.62
1.1
77.2
36
Major PPT
76.2
0.59
0.8
69
36.7
Minor 5ss
26
-2.8
3.4
30.5
42.8
Minor BPS
72.9
0.8
1.7
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006256
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006496
20092281 - 20098353
6073