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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20095888_20096787_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20095888 - 20096787
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTCTCCTTCATT
Flanking Amino Acid:
QPVSPPSSATGQLSGKQVLS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
75
0.62
1.1
77.2
36
Major PPT
76.2
0.59
0.8
69
36.7
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
72.9
0.8
1.7
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006256
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020013
20094690 - 20098353
3664