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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20097286_20097641_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20097286 - 20097641
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGCCACTGACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
78.8
0.65
0.7
73.4
24.8
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
43.2
-0.5
1.8
49.28
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006256
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020013
20094690 - 20098353
3664
ENSAPLT00000006496
20092281 - 20098353
6073