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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20118796_20118903_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20118796 - 20118903
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTCCATCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
GCCCCCGTCACC
Flanking Amino Acid:
QFVPFREFKNASPTALAKCV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
71.4
0.48
0.8
65.1
30.2
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
43.8
-0.5
2.3
52.09
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020655
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048338
20118604 - 20119041
438