Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20121389_20121550_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

20121389 - 20121550

Intron Length:

162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGGTGGGG

5'SS Class:

weak_major

3'SS Sequence:

CTTGGGGCCGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATTAT

U12 Branch Point Sequence:

GACCCCATAAAT

Flanking Amino Acid:

HSQGKFMRKGEAAAPCLVLG

Intron Amino Acid Position:

319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.9

0.07

1.1

38.5

41.3

Major BPS

68.1

0.45

58.1

38.5

Major PPT

45.9

-0.2

1.7

45.8

41.4

Minor 5ss

21.4

-3.3

3.4

19.6

Minor BPS

50.4

0.09

1.8

66.43

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027720

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042229

20121107 - 20123999

2893