Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20121818_20121891_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20121818 - 20121891

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCCCT

5'SS Class:

major

3'SS Sequence:

CCTTGTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAC

U12 Branch Point Sequence:

GCTGTCTGACCC

Flanking Amino Acid:

FYITYEELHRDLRGTAQRLS

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

62.3

43.9

Major BPS

63.7

0.34

1.2

41.8

Major PPT

70.8

0.47

0.9

64.6

36.5

Minor 5ss

34.6

-1.7

3.1

40.8

Minor BPS

46.6

-0.2

1.8

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027720

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042229

20121107 - 20123999

2893