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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20126369_20126455_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20126369 - 20126455
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
CCTCCCCGGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GGGTGCTCACCC
Flanking Amino Acid:
KLNTGHVGGQFWSVYVPCET
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
61.3
0.26
1
57.2
33.3
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
43.5
-0.5
2.1
52.03
44.9

Associated Gene:

Gene:
DPEP1
Ensembl Gene ID:
ENSAPLG00000020169
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046040
20124992 - 20129270
4279