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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20127299_20127376_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20127299 - 20127376
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
ACCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAC
U12 Branch Point Sequence:
GCACCACCACCT
Flanking Amino Acid:
NVPDDVLRMVAAKEGLVMVN
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
46.4
-0.2
1.4
53.6
41.6
Major PPT
70.9
0.47
0.8
61.9
34.2
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
36.5
-0.9
2
49.83
42.7

Associated Gene:

Gene:
DPEP1
Ensembl Gene ID:
ENSAPLG00000020169
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046040
20124992 - 20129270
4279