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Intron Name: Anas_platyrhynchos_platyrhynchos_12_20132314_20132706_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20132314 - 20132706

Intron Length:

393

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGGTC

5'SS Class:

strong_major

3'SS Sequence:

CCTCCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACCCAT

U12 Branch Point Sequence:

TACCCATGAAGC

Flanking Amino Acid:

KVQTAVTMKGVTKNMAQVTK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

73.4

37.7

Major BPS

64.5

0.36

1.2

72.7

34.4

Major PPT

82.1

0.72

0.7

76.1

25.9

Minor 5ss

33.3

-1.9

3.7

41.5

45.4

Minor BPS

45.4

-0.3

55.46

Associated Gene:

Gene:

CHMP1A

Ensembl Gene ID:

ENSAPLG00000005521

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005727

20131168 - 20136161

4994