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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20132854_20133406_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20132854 - 20133406
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCCAG
U12 Branch Point Sequence:
GTGCCAGCAGCT
Flanking Amino Acid:
SKAEQAKVKKALQQKNVECA
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.2
39.5
Major BPS
38.3
-0.7
1.7
43.9
48.6
Major PPT
82
0.72
0.8
73.1
37.3
Minor 5ss
27.6
-2.6
3.4
40.1
46
Minor BPS
37.3
-0.8
2.3
56.09
45.4

Associated Gene:

Gene:
CHMP1A
Ensembl Gene ID:
ENSAPLG00000005521
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005727
20131168 - 20136161
4994