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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20135746_20135864_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20135746 - 20135864
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAT
U12 Branch Point Sequence:
CGTGCCTTACCT
Flanking Amino Acid:
KEVVVGNHLESIFLVMGYCE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.8
75
35.2
Major BPS
54.5
0.11
1.4
66.4
42.2
Major PPT
75.8
0.58
0.8
69.4
31
Minor 5ss
28.6
-2.5
3.4
37.5
47.2
Minor BPS
61.8
0.45
1.8
76.24
46.3

Associated Gene:

Gene:
CDK10
Ensembl Gene ID:
ENSAPLG00000005724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005941
20134013 - 20138246
4234