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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20135947_20136095_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20135947 - 20136095
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGCAC
U12 Branch Point Sequence:
CAGCGGGTGACG
Flanking Amino Acid:
NMQTPFSEAQVKCIILQVLK
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
44
-0.3
1.5
48.8
46.3
Major PPT
73.3
0.52
0.8
64.5
36.5
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
31.5
-1.6
2.5
31.96
41.3

Associated Gene:

Gene:
CDK10
Ensembl Gene ID:
ENSAPLG00000005724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005941
20134013 - 20138246
4234