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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20136514_20136613_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20136514 - 20136613
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTCCTCTCACCT
Flanking Amino Acid:
LMTDKGCVKIADFGLARTYG
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
47.7
-0
1.9
64.73
45.8

Associated Gene:

Gene:
CDK10
Ensembl Gene ID:
ENSAPLG00000005724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005941
20134013 - 20138246
4234