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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20137341_20137604_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20137341 - 20137604
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
GCAAGCAGAGCT
Flanking Amino Acid:
NFLFMYDPKKRATAKDCLES
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
75.9
0.58
0.8
69.8
31
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
36.3
-0.9
2
48.66
43.4

Associated Gene:

Gene:
CDK10
Ensembl Gene ID:
ENSAPLG00000005724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005941
20134013 - 20138246
4234