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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_201398_201525_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201398 - 201525
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTCTTTTATT
Flanking Amino Acid:
AINDAILQSSRFQGQLPDKT
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.8
0.85
0.8
85.9
33.1
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
ZNF507
Ensembl Gene ID:
ENSAPLG00000013158
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044053
201034 - 219415
18382
ENSAPLT00000026776
201034 - 219415
18382
ENSAPLT00000013700
201034 - 219415
18382