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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_201661_207974_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201661 - 207974
Intron Length:
6314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAACTTTTAAAT
Flanking Amino Acid:
RRIHNSDKPYRCSLCGYVCS
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85
0.79
0.7
78.4
35.5
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
61.1
0.43
1.3
72.66
37.6

Associated Gene:

Gene:
ZNF507
Ensembl Gene ID:
ENSAPLG00000013158
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026776
201034 - 219415
18382