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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20181222_20181732_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20181222 - 20181732
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TCCTTCTTGACT
Flanking Amino Acid:
DAELAGSVLSDFAITFLQNG
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
75.3
37.7
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80.6
0.69
0.9
73.8
35.8
Minor 5ss
20.7
-3.4
3.9
31.9
42.9
Minor BPS
74.9
0.86
1.2
82.23
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024859
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029231
20181124 - 20186788
5665
ENSAPLT00000035006
20181124 - 20186788
5665