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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20181846_20182894_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20181846 - 20182894
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTGAACTGAACG
Flanking Amino Acid:
NIIGLGELLESNPDAPAVVE
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
82.5
0.73
0.9
80.5
37
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
53.9
-0
1.8
62.52
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024859
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029231
20181124 - 20186788
5665