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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20194189_20194390_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20194189 - 20194390
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
GTGGCACAGACA
Flanking Amino Acid:
LLLTPAAEAQMVQSLGFAIY
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
79.9
0.67
0.8
73.3
31.2
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
38.8
-0.8
2.1
48.87
41.7

Associated Gene:

Gene:
SPIRE2
Ensembl Gene ID:
ENSAPLG00000007054
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007323
20190816 - 20198090
7275