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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20195684_20195794_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20195684 - 20195794
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGCA
5'SS Class:
major
3'SS Sequence:
GCCCCGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
AGGCACTGAGCT
Flanking Amino Acid:
PVETQYRGQKGYSSLPCIPH
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.7
39.3
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
68.5
0.42
0.9
60.7
35.2
Minor 5ss
28.5
-2.5
3.6
39.4
46
Minor BPS
44.9
-0.3
1.8
59.37
42.9

Associated Gene:

Gene:
SPIRE2
Ensembl Gene ID:
ENSAPLG00000007054
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007323
20190816 - 20198090
7275