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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20197007_20197122_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20197007 - 20197122
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TACGTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CCTTGCTCAGCA
Flanking Amino Acid:
SWPSACLFCKRSVCTSCSLK
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
67.4
0.39
1
57.7
42.9
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
46.2
-0.2
2.2
59.11
46.7

Associated Gene:

Gene:
SPIRE2
Ensembl Gene ID:
ENSAPLG00000007054
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007323
20190816 - 20198090
7275