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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20197437_20197538_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20197437 - 20197538
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TGCGCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GGGGGCTGACCA
Flanking Amino Acid:
ALPLRRRETFHSLQGPGWRR
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
59.9
39.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
64.9
0.34
0.9
54.5
36.5
Minor 5ss
32.2
-2
2.9
42.7
37.7
Minor BPS
40
-0.7
2.1
45.37
43.5

Associated Gene:

Gene:
SPIRE2
Ensembl Gene ID:
ENSAPLG00000007054
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007323
20190816 - 20198090
7275