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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20209943_20211033_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20209943 - 20211033
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GAAGCTGTGACC
Flanking Amino Acid:
FGARAVLGDQRPRQRQRQYV
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
44.7
-0.4
2
51.5
39.9

Associated Gene:

Gene:
TCF25
Ensembl Gene ID:
ENSAPLG00000007149
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007454
20203607 - 20220488
16882
ENSAPLT00000045576
20203607 - 20220488
16882