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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20240913_20241449_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20240913 - 20241449
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
TTCTCCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTCTCCCTCACA
Flanking Amino Acid:
NEVVVKNMRLKQEEEITRLC
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
37.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
81.7
0.71
0.7
76.1
26
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
59.1
0.28
2.1
75.88
41.5

Associated Gene:

Gene:
GAS8
Ensembl Gene ID:
ENSAPLG00000003262
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003329
20240495 - 20246443
5949